Samer Shamshad

Mrs
Samer
Shamshad

Mid Stage Researcher
TDU & ICAR-NIVEDI
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Biography
TECHNICAL SKILLS Wet Lab: • Developed and standardized IgM-capture ELISA for acute infection detection and IgG ELISA for identifying past infection or vaccine-induced antibodies. • Cell Culture & Transfection: Lipofectamine transfection, MTT cytotoxicity, hypermethylation studies • Immunoassays & Protein Techniques: Immunohistochemistry, hybridoma (monoclonal antibody production/purification), ELISPOT, ELISA (direct/indirect/competitive), lateral flow assays (LFIA), fluorescent polarization, spectrophotometry, immunoprecipitation, Western blot • Molecular Biology: Nucleic acid extraction/quantification, PCR, molecular cloning, recombinant antigen expression (prokaryotic and eukaryotic) • Diagnostics & Animal Work: Agglutination tests (RBPT, SAT, MAT), microscopy, hemagglutination/inhibition assays, vaccine testing (safety/sterility/potency), rodent inoculation, animal immunization • Additional: Protein crystallization, mass spectrometry, flow cytometry (basic FACS) Dry Lab & Data Analysis: • Bioinformatics & NGS: NGS data analysis (RNA-seq, variant calling, metagenomics, microarrays), Linux, cloud computing, Python • CADD & Statistics: Computer-aided drug design, R applications, machine learning, GraphPad, Origin, SPSS • Other Software: Microsoft Office, Image-J, QGIS Professional Responsibilities • Literature review and experimental design • Execution and analysis of experiments • Assisting in organization of national seminars/training programs • Requisition management and project meeting participation • Preparation of progress reports, manuscripts, presentations, annual reports • Project budget monitoring and team collaboration PROFESSIONAL EXPERIENCE 8+ years of research in molecular biology, diagnostics, and assay development (BSL2+ laboratories): • Research Scholar (2023–Present) ICAR-NIVEDI, Bengaluru (BSL2+ Lab) Project: Production & Characterization of Monoclonal Antibodies Against BTV Serotype • Young Professional-II (2023–2024) ICAR-NIVEDI, Bengaluru (BSL2+ Lab) Project: Characterization of bluetongue virus strains and vaccine candidate assessment • Research Associate-III (2021–2023) ICAR-NIVEDI, Bengaluru (BSL2+ Lab) Validation/Field Testing of DIVA tests for brucellosis surveillance (DBT-ADMaC Phase-II) • Junior Research Fellow (multiple projects, 2015–2021) ICAR-NIVEDI, NIMHANS, IVRI, NICPR – BSL2+ & Cancer/Viral/Parasitic Diagnostic Labs Projects in monoclonal antibody production, brucellosis, cysticercosis, IBD vaccine, HPV diagnostics, cancer therapeutics, and method development • Research Assistant & Trainee (2011–2014) National Institute of Cancer Prevention and Research (NICPR); Codon Biotech; IMS Engineering College Projects on HPV, plant antimicrobials, dengue serology, molecular docking, advanced biotechnology training EDUCATION 1. Master of Technology (M.Tech), Biotechnology Gold Medalist; 90.7%, IMS Engineering College, Ghaziabad (2012 – 2014) 2. Bachelor of Technology (B.Tech), Biotechnology Gold Medalist; 82.3%, IILM College of Engineering & Technology, Greater Noida (2008 – 2012) SELECTED PUBLICATIONS 1. Siju Susan Jacob, Pinaki Prasad Sengupta, S. Shamshad, et al. (2025) Development of an enzyme immunoassay employing low molecular weight recombinant Ag1 and Ag1V1 proteins for porcine cysticercosis. Vet Parasitol, 338:110532. 2. Sinha PR, Hegde SR, Mittal R, Jagat CC, Gowda U, Chandrashekhar R, Muthaiah G, Shamshad S, Chanda MM, Ganji V, Putty K, Hemadri D. (2024) In silico development of a multi-epitope subunit vaccine against Bluetongue virus in Ovis aries using immunoinformatic approach. Pathogens, 13(11):944. 3. Shome R, Patil S, Shamshad S, Skariah S, Sahib MM, Shanmugam G, Barman NN, Bora DP, Shome A. (2024) Nationwide cross-sectional study on brucellosis sero-prevalence in buffaloes using competitive ELISA. Indian J Anim Sci, 94(12), 1022–1030. 4. Shome R, Patra S, Sahib MM, Shanmugam G, Skariah S, Shamshad S, et al. (2025) Chimeric protein A/G conjugate based lateral flow assay for brucellosis detection. J Immunol Methods, 518:113845. 5. Jacob SS, Sengupta PP, Chandu AGS, Shamshad S, et al. (2021) Existence of genetic lineages within Asian genotype of Taenia solium. Transboundary and Emerging Diseases, 69(4):2256-2265. 6. Rajeswari Shome, Muneera Mohamed Sahib, Sudipta Patra, G. Shanmugam, Shiva Dubey, Samer Shamshad, et al. (2023) Evaluation of an in-house IgM/IgG lateral flow assay for human brucellosis. Indian J Med Microbiol, 42(6):55–58. 7. Sudipta Patra, Muneera M. Sahib, G. Shanmugam, Somy Skariah, Samer Shamshad, et al. (2023) Evaluation of an In-house Indirect ELISA for IgM and IgG anti-Brucella Antibodies in Human Brucellosis. J Pure Appl Microbiol, 17(3):1650-1658. Full publication list is available on google scholar: https://scholar.google.com/citations?hl=en&user=AfHxvTAAAAAJ ACADEMIC AWARDS • Cracked All India Graduate Aptitude Test in Engineering (GATE-2022) organized by IIT-Kharagpur REFERENCES, EDUCATIONAL DOCUMENTS AND EXPERIENCE CERTIFICATES: Available on request.
Research interests
Bluetongue virus (BTV) • Orbivirus • VP2 serotype-specific diagnostics • DIVA companion diagnostics • Immunodiagnostics (ELISA/LFA) • Hybridoma & monoclonal antibodies • RT-qPCR assay development • One-Health, ruminant diseases • Field-deployable point-of-care tests • Assay validation (ROC/AUC, LR+/LR–)
Projects you're working on
24 June 2023–Till July 2025 Ph.D. Scholar (Worked in Bio Safety Laboratory-BSL2+) Completed Research work: Preparing manuscripts & writing thesis since August’2025. Thesis submission due by February 2026 as per the university guidelines. Registered with MOU: Transdisciplinary University TDU, Bengaluru, Karnataka-560064 Research work station: ICAR-National Institute of Veterinary Epidemiology and Disease Informatics Ramagondanahalli, Yelahanka, Karnataka-560064 Bengaluru (INDIA) Non-funded project tittle “Production and Characterization of Monoclonal Antibodies Against BTV Serotype-5” Supervisor: Dr. Divakar Hemadri, (MV.Sc, Ph.D., Assistant Director General, ADG, ICAR, New Delhi & Principal Investigator) and Dr. M. Mudassar Chanda (Senior Scientist, ICAR-NIVEDI, Bengaluru) 2) 1 July 2023–30 June 2024 : Young Professional-II (Worked in Bio Safety Laboratory-BSL2+) DAHD_NLM Funded Project “Characterization of bluetongue virus strains/serotypes and assessment of their suitability as vaccine candidates to the current field scenario” Supervisor: Dr. Divakar Hemadri, (MV.Sc, Ph.D, Principal Scientist & Principal Investigator)
Discipline
Bioinformatics Challenge model development Epidemiology Immunology – B-cells Molecular biology Virology
Host species
Buffalo Cattle Small ruminants Zoonoses
Pathogen
BacteriaBrucella ParasitesTaenia solium Viruses VirusesBluetongue virus
Stage of vaccine development
Antigen discovery and immunogen design